Research explorer tool

8 results

A universal character model and ontology of defined terms for taxonomic description.

Conference Proceeding
Paterson, T., Kennedy, J., Pullan, M. R., Cannon, A., Armstrong, K. E., Watson, M. F., …Russell, G. (2004)
A universal character model and ontology of defined terms for taxonomic description. In E. Rahm (Ed.), Proceedings of Data Integration in the Life Sciences (DILS), 63-78
Taxonomists classify biological specimens into groups (taxa) on the basis of similarities between their observed features (characters). The description of these characters is ...

The Prometheus Description Model: an examination of the taxonomic description-building process and its representation

Journal Article
Pullan, M. R., Armstrong, K. E., Paterson, T., Cannon, A., Kennedy, J. B., Watson, M. F., …Raguenaud, C. (2005)
The Prometheus Description Model: an examination of the taxonomic description-building process and its representation. Taxon, 54(3), 751 - 765. https://doi.org/10.2307/25065431
A model for representing taxonomic descriptive data is presented. The model has been developed in response to the growing requirement for the global exchange of descriptive da...

A methodology for composing well-defined character descriptions.

Report
Paterson, T., Cannon, A., Raguenaud, C., Russell, G., Armstrong, K. E., MacDonald, S. M., …Kennedy, J. (2003)
A methodology for composing well-defined character descriptions
Taxonomy has been described as “the science of documenting biodiversity”, which involves collecting, naming, describing, identifying and classifying specimens of organisms (Ke...

Ontology-Driven Automated Generation of Data Entry Interfaces to Databases

Conference Proceeding
Cannon, A., Kennedy, J. B., Paterson, T., & Watson, M. F. (2004)
Ontology-Driven Automated Generation of Data Entry Interfaces to Databases. In H. Williams, & L. Mackinnon (Eds.), Key Technologies for Data Management; Lecture Notes in Computer Science, 150-164. doi:10.1007/978-3-540-27811-5_15
This paper discusses an ontology based approach for the automatic generation of data entry interfaces to databases. An existing domain ontology is mapped to a system domain mo...

MaTSE: The microarray time-series explorer

Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...

MaTSE: the gene expression time-series explorer.

Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...

Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data.

Conference Proceeding
Craig, P., Cannon, A., Kennedy, J., & Kukla, R. (2010)
Pattern browsing and query adjustment for the exploratory analysis and cooperative visualisation of microarray time-course data. In Y. Luo (Ed.), Cooperative Design, Visualization, and Engineering, 199-206. https://doi.org/10.1007/978-3-642-16066-0_30
This paper presents work to support collaborative visualisation and data analysis in the microarray time-series explorer (MaTSE) software. We introduce a novel visualisation c...

Form

Book Chapter
Kennedy, J., & Cannon, A. (2009)
Form. In L. Liu, & M. T. Özsu (Eds.), Encyclopedia of Database SystemsSpringer-Verlag
5 results

MATSE: Information Visualisation of Microarray Time-course Data

2007 - 2009
Microarray Time-series Explorer (MaTSE) is a software application developed to improve the analysis of microarray data by allowing the user to explore their data using a unique visual interface.  Thro...
Funder: Scottish Enterprise | Value: £176,630

Prometheus II: Capturing and Relating Character Concept Definitions in Plant Taxonomy

2001 - 2004
Taxonomy has been described as “the science of documenting biodiversity”, which involves collecting, naming, describing, identifying and classifying specimens of organisms. Descriptions are the fundam...
Funder: Biotechnology and Biological Sciences Research Council | Value: £128,444

TaxVis: Visualisation Tools for Integrating Large Alternative Linnaean Taxonomies

2006 - 2008
The TaxViz project is developing visualisation techniques for comparing multiple taxonomic hierarchies. Biological taxonomy involves the classification and naming of plants, animals and all the oth...
Funder: Engineering and Physical Sciences Research Council | Value: £139,572

Visual Exploration of Species-referenced Repositories (VESpeR)

2012 - 2014
http://www.vesper.org.uk Contains the software produced for this project, a suite of components for analysing Darwin Core Archive (DWCA) datafiles for data quality issues such as data coverage, class...
Funder: Biotechnology and Biological Sciences Research Council | Value: £104,072

Biological Visualisation Network - BioVisNet

2014 - 2017
Biology is a visually grounded scientific discipline-from the way data is collected and analysed to the manner in which the results are communicated to others. Traditionally pictures in scientific pub...
Funder: Biotechnology and Biological Sciences Research Council | Value: £151,201