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88 results

Coordinated graph and scatter-plot views for the visual exploration of microarray time-series data

Conference Proceeding
Craig, P., & Kennedy, J. (2003)
Coordinated graph and scatter-plot views for the visual exploration of microarray time-series data. In IEEE Symposium on Information Visualization, 173-180. doi:10.1109/infvis.2003.1249023
Microarrays are a relatively new, high-throughput data acquisition technology for investigating biological phenomena at the micro-level. The product of microarray experiments ...

Coordinated parallel views for the exploratory analysis of microarray time-course data.

Conference Proceeding
Craig, P., Kennedy, J., & Cumming, A. (2005)
Coordinated parallel views for the exploratory analysis of microarray time-course data. https://doi.org/10.1109/CMV.2005.5
Microarray time-course data relate to the recorded activity of thousands of genes, in parallel, over multiple discrete points in time during a biological process. Existing tec...

Concept relationship editor: a visual interface to support the assertion of synonymy relationships between taxonomic classifications

Conference Proceeding
Craig, P., & Kennedy, J. (2008)
Concept relationship editor: a visual interface to support the assertion of synonymy relationships between taxonomic classifications. In K. Börner, M. Gröhn, J. Park, J. C. Roberts, M. T. Gröhn, & J. C. Roberts (Eds.), Proc. SPIE 6809, Visualization and Data Analysis 2008, 680906-680912. doi:10.1117/12.765540
An increasingly common approach being taken by taxonomists to define the relationships between taxa in alternative hierarchical classifications is to use a set-based notation ...

Combining linking and focusing techniques for a multiple hierarchy visualisation

Conference Proceeding
Graham, M., & Kennedy, J. (2002)
Combining linking and focusing techniques for a multiple hierarchy visualisation. In E. Banissi, F. Khosrowshahi, M. Sarfraz, & A. Ursyn (Eds.), Proceedings [of the] Fifth International Conference on Information Visualisation, 425-432. https://doi.org/10.1109/iv.2001.942092
Visualisations have previously combined linking and brushing operations successfully. However, none to our knowledge have combined linking and focussing techniques. We describ...

Pianola - visualization of multivariate time-series security event data.

Conference Proceeding
Thomson, A., Graham, M., & Kennedy, J. (2013)
Pianola - visualization of multivariate time-series security event data. In Proceedings of IV2013, 123-131. https://doi.org/10.1109/IV.2013.15
Monitoring log files for network intrusions is unwieldy. To build a mental model of the log, an analyst is required to recognise continuous timelines and attack patterns from ...

MLCut: exploring multi-level cuts in dendrograms for biological data

Conference Proceeding
Vogogias, A., Kennedy, J., Archambault, D., Anne Smith, V., & Currant, H. (2016)
MLCut: exploring multi-level cuts in dendrograms for biological data. In C. Turkay, & T. Ruan Wan (Eds.), Computer Graphics and Visual Computing (CGVC)https://doi.org/10.2312/cgvc.20161288
Choosing a single similarity threshold for cutting dendrograms is not sufficient for performing hierarchical clustering analysis of heterogeneous data sets. In addition, alter...

MaTSE: The microarray time-series explorer

Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...

MaTSE: the gene expression time-series explorer.

Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...

Redeeming pedigree data with an interactive error cleaning visualisation.

Conference Proceeding
Graham, M., Kennedy, J., Paterson, T., & Law, A. (2012)
Redeeming pedigree data with an interactive error cleaning visualisation. In Proceedings of Advanced Visual Interfaces 2012, 741-744. https://doi.org/10.1145/2254556.2254698
We describe a visual data cleansing application for pedigree genotype data, which is used to redeem otherwise unusable pedigree data sets. Biologists and bioinformaticians dyn...

Teallach: a model-based user interface development environment for object databases

Journal Article
Griffiths, T., Barclay, P. J., Paton, N. W., McKirdy, J., Kennedy, J., Gray, P., …Pinherio da Silva, P. (2001)
Teallach: a model-based user interface development environment for object databases. Interacting with Computers, 14(1), 31-68. doi:10.1016/s0953-5438(01)00042-x
Model-based user interface development environments show promise for improving the productivity of user-interface developers and possibly for improving the quality of develope...
14 results

Scottish Woodlands KTP

2013 - 2014
Scottish Woodlands Ltd is Scotland's leading independent full-service forest management company. It is also the second largest operator in the UK, with a network of 17 offices operating throughout Sco...
Funder: Innovate UK | Value: £110,222

FOCAS

2013 - 2016
FOCAS is a coordination action in the area of collective adaptive systems. It provides increased visibility to the research carried out by projects funded by the FOCAS FET Proactive Initiative and oth...
Funder: European Commission | Value: £639,999

Torchbearer

2014 - 2014
The creation of a ‘software-as-a-service’ product to allow Client companies, or their agents, to improve their ‘Propositions’ – their own commercial offers; this is done by removing the need for ‘twea...
Funder: Scottish Funding Council | Value: £4,962

Weather Prediction - Motogoloco

2015 - 2015
The solution for the synchronisation issue was to include a simultaneous animation of the journey and the weather data. This provided an intuitive visualisation of two independent sets of data.
Funder: Scottish Funding Council | Value: £5,000

Visual Justifications for Ontologies

2015 - 2016
Ontologies are a way of reasoning about data in an efficient manner. Ontologies are increasingly prevalent in a range of applications, including the Semantic Web, medicine and law. The development and...
Funder: Engineering and Physical Sciences Research Council | Value: £9,320

DataVise

2014 - 2014
A prototype visualisation was built using D3-based libraries on top of a supplied data set (which in essence was a data cube). This was then connected to an R-based statistical service which allowed a...
Funder: Scottish Funding Council | Value: £5,000

Aridhia

2014 - 2014
A prototype visualisation which demonstrated the advantages of dynamic representations of genomes over standard static diagrams was developed. This used the d3 library to allow interactive layering of...
Funder: Scottish Funding Council | Value: £5,000

KTP Delta DNA (Games Analytics)

2014 - 2016
To analyse in game communications to predict engagement of players.
Funder: Innovate UK | Value: £133,098

Biological Visualisation Network - BioVisNet

2014 - 2017
Biology is a visually grounded scientific discipline-from the way data is collected and analysed to the manner in which the results are communicated to others. Traditionally pictures in scientific pub...
Funder: Biotechnology and Biological Sciences Research Council | Value: £151,201

Security Visualisation

2018 - 2022
To optimise the ZoneFox product through the development and incorporation of effective information visualisation tools for generating insight through visual exploration and discovery of relationships ...
Funder: Innovate UK | Value: £184,993
7 results

Visualising Multiple Overlapping Classification Hierarchies

1998 - 2002
The revision or reorganisation of hierarchical data sets can result in many possible hierarchical classifications composed of the same or ove...
Dr Martin Graham | Director of Studies: Prof Jessie Kennedy | Second Supervisor: Prof David Benyon

Intermediated Reality

2016 - 2020
Real-time solutions to reducing the gap between virtual and physical worlds for photorealistic interactive Augmented Reality (AR) are presented. First, a method of texture deforma...
Doctor Llogari Casas Cambra | Director of Studies: Prof Kenny Mitchell | Second Supervisor: Dr Kevin Chalmers

Investigating communicating sequential processes for Java to support ubiquitous computing

2005 - 2009
Ubiquitous Computing promises to enrich our everyday lives by enabling the environment to be enhanced via compu...
Dr Kevin Chalmers | Director of Studies: Prof Jon Kerridge | Second Supervisor: Dr Imed Romdhani

Interactive Visualisation Tools for Supporting Taxonomists Working Practice

2001 - 2006
The necessity for scientists and others to use consistent terminology has recently been regarded as fundamental to advancing ...
Dr Alan Cannon | Director of Studies: Prof Jessie Kennedy

The evaluation of data filtering criterial in wind turbine power performance assessment

2012 - 2019
Dr Brian Davison | Director of Studies: Prof Tariq Muneer | Second Supervisor: Prof Ahmed Al-Dubai

Tasks and visual techniques for exploration of temporal graph data

2010 - 2017
Dr Natalie Kerracher | Director of Studies: Dr Kevin Chalmers | Second Supervisor: Prof Jessie Kennedy

1994 - 1997
Prof Kenny Mitchell | Director of Studies: Prof Jessie Kennedy | Second Supervisor: Peter Barclay