Research Output
Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions
  The BioGRID database is an extensive repository of curated genetic and protein interactions for the budding yeast Saccharomyces cerevisiae, the fission yeast Schizosaccharomyces pombe, and the yeast Candida albicans SC5314, as well as for several other model organisms and humans. This protocol describes how to use the BioGRID website to query genetic or protein interactions for any gene of interest, how to visualize the associated interactions using an embedded interactive network viewer, and how to download data files for either selected interactions or the entire BioGRID interaction data set.

  • Type:

    Article

  • Date:

    04 January 2016

  • Publication Status:

    Published

  • Publisher

    Cold Spring Harbor Laboratory Press

  • DOI:

    10.1101/pdb.prot088880

  • Cross Ref:

    10.1101/pdb.prot088880

  • ISSN:

    1940-3402

  • Library of Congress:

    QH301 Biology

  • Dewey Decimal Classification:

    570 Life sciences; biology

  • Funders:

    Canadian Institutes of Health Research; National Institutes of Health; Biotechnology and Biological Sciences Research Council

Citation

Oughtred, R., Chatr-aryamontri, A., Breitkreutz, B., Chang, C. S., Rust, J. M., Theesfeld, C. L., …Tyers, M. (2016). Use of the BioGRID Database for Analysis of Yeast Protein and Genetic Interactions. Cold Spring Harbor protocols, 2016(1), pdb.prot088880. https://doi.org/10.1101/pdb.prot088880

Authors

Keywords

BIOGRID, protein interactions, bioinformatics,

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