An earlier software application of ours, TetraploidMap for Windows, enabled linkage analysis and quantitative trait locus interval mapping to be carried out in an experimental...
Vogogias, A., Kennedy, J., Archambault, D., Anne Smith, V. & Currant, H. (2016). MLCut: exploring multi-level cuts in dendrograms for biological data. In Turkay, C. & Ruan Wan, T. (Eds.). Computer Graphics and Visual Computing (CGVC)doi:10.2312/cgvc.20161288. ISBN 978-3-03868-022-2
Choosing a single similarity threshold for cutting dendrograms is not sufficient for performing hierarchical clustering analysis of heterogeneous data sets. In addition, alter...
Vogogias, A., Kennedy, J. & Archambault, D. (2016). Hierarchical Clustering with Multiple-Height Branch-Cut Applied to Short Time-Series Gene Expression Data. In Isenberg, T. & Sadlo, F. (Eds.). EuroVis 2016 - Posters, 1-3. doi:10.2312/eurp.20161127. ISBN 978-3-03868-015-4
Rigid adherence to pre-specified thresholds and static graphical representations can lead to incorrect decisions on merging of clusters. As an alternative to existing automate...
Urquhart, N. B., McEwan, T., Holden, R. & Vogogias, T. CO2Y the intelligent green solution: minimising carbon emissions by maximising shared travel opportunity. Paper presented at Scottish Transport Applications Research Conference, Glasgow
It is in the interests of everybody that the environment is protected. In view of the recent leaps in environmental awareness it would seem timely and sensible, therefore, for...
Network models are often created to describe interactions between components in biological systems. At a molecular leve...