Visual Exploration of Alternative Taxonomies through Concepts
Journal Article
Graham, M., & Kennedy, J. (2007)
Visual Exploration of Alternative Taxonomies through Concepts. Ecological Informatics, 2, 248-261. https://doi.org/10.1016/j.ecoinf.2007.07.004
A graphical user interface is presented that allows users of taxonomic data to explore concept relationships between conflicting but related taxonomic classifications.
Ecolog...
Teallach: a model-based user interface development environment for object databases
Journal Article
Griffiths, T., Barclay, P. J., Paton, N. W., McKirdy, J., Kennedy, J., Gray, P., …Pinherio da Silva, P. (2001)
Teallach: a model-based user interface development environment for object databases. Interacting with Computers, 14(1), 31-68. https://doi.org/10.1016/s0953-5438%2801%2900042-x
Model-based user interface development environments show promise for improving the productivity of user-interface developers and possibly for improving the quality of develope...
BayesPiles: Visualisation Support for Bayesian Network Structure Learning
Journal Article
Vogogias, A., Kennedy, J., Archambault, D., Bach, B., Smith, V. A., & Currant, H. (2018)
BayesPiles: Visualisation Support for Bayesian Network Structure Learning. ACM transactions on intelligent systems and technology, 10(1), 1-23. https://doi.org/10.1145/3230623
We address the problem of exploring, combining and comparing large collections of scored, directed networks for understanding inferred Bayesian networks used in biology. In th...
A comparison of techniques for name matching
Journal Article
Peng, T., Li, L., & Kennedy, J. (2012)
A comparison of techniques for name matching. GSTF journal on computing, 2,
Information explosion is a problem for everyone nowadays. It is a great challenge to all kinds of businesses to maintain high quality of data in their information applications...
MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
Constructing and Evaluating Visualisation Task Classifications: Process and Considerations
Journal Article
Kerracher, N., & Kennedy, J. (2019)
Constructing and Evaluating Visualisation Task Classifications: Process and Considerations. Computer Graphics Forum, 36(3), 47-59. https://doi.org/10.1111/cgf.13167
Categorising tasks is a common pursuit in the visualisation research community, with a wide variety of taxonomies, typologies, design spaces, and frameworks having been develo...
Extending taxonomic visualisation to incorporate synonymy and structural markers.
Journal Article
Graham, M., & Kennedy, J. (2005)
Extending taxonomic visualisation to incorporate synonymy and structural markers. Information Visualization, 4, 206-223. https://doi.org/10.1057/palgrave.ivs.9500096
The visualisation of taxonomic hierarchies has evolved from indented lists of names to techniques that can display thousands of nodes and onto hundreds of thousands of nodes o...
A survey of multiple tree visualisation.
Journal Article
Graham, M., & Kennedy, J. (2010)
A survey of multiple tree visualisation. Information Visualization, 9, 235-252. https://doi.org/10.1057/ivs.2009.29
This paper summarises the state-of-the-art in multiple tree visualisations. It discusses the spectrum of current representation techniques used on single trees, pairs of trees...
Exploring multiple trees through DAG representations
Journal Article
Graham, M., & Kennedy, J. (2007)
Exploring multiple trees through DAG representations. IEEE Transactions on Visualization and Computer Graphics, 13, 1294-1301. https://doi.org/10.1109/TVCG.2007.70556
We present a Directed Acyclic Graph visualisation designed to allow interaction with a set of multiple classification trees, specifically to find overlaps and differences betw...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...