Developing a core ontology for taxonomic data.
Conference Proceeding
Kennedy, J., Gales, R., Hyam, R., Kukla, R., Wieczorek, J., Hagedorn, G., …Vieglais, D. (2006)
Developing a core ontology for taxonomic data. In L. Belbin, A. Rissoné, & A. Weitzman (Eds.), Proceedings of TDWG (2006), St Louis, MI
Over recent years several sub-groups within the Taxonomic Databases Working Group (TDWG) have developed models and exchange standards to facilitate data sharing within the tax...
Converting an existing taxonomic data resource to employ an ontology and LSIDs.
Conference Proceeding
Kennedy, J., Gales, R., & Kukla, R. (2006)
Converting an existing taxonomic data resource to employ an ontology and LSIDs. In L. Belbin, A. Rissoné, & A. Weitzman (Eds.), Proceedings of TDWG (2006), St Louis, MI
Data sharing is fundamental to biodiversity and taxonomic data applications, however previous attempts at developing mechanisms to facilitate sharing within the community have...
Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data.
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data. Information Visualization, 4, 149-163. doi:10.1057/palgrave.ivs.9500101
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...
MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
An open model-based interface development system: The Teallach approach.
Conference Proceeding
Griffiths, T., McKirdy, J., Paton, N. W., Kennedy, J., Cooper, R., Barclay, P. J., …Dinn, A. (1998)
An open model-based interface development system: The Teallach approach. In P. Markopoulos, & P. Johnson (Eds.), Design, Specification and Verification of Interactive Systems '98. Proceedings of the Eurographics Workshop, 34-50
The goal of the Teallach project is to provide facilities for the systematic development of interfaces to object databases in a manner which is independent of both a specific ...
Design and Evaluation of Visualisation Techniques to Facilitate Argument Exploration
Journal Article
Khartabil, D., Collins, C., Wells, S., Bach, B., & Kennedy, J. (2021)
Design and Evaluation of Visualisation Techniques to Facilitate Argument Exploration. Computer Graphics Forum, 40(6), 447-465. https://doi.org/10.1111/cgf.14389
This paper reports the design and comparison of three visualizations to represent the structure and content within arguments. Arguments are artefacts of reasoning widely used ...
Pianola - visualization of multivariate time-series security event data.
Conference Proceeding
Thomson, A., Graham, M., & Kennedy, J. (2013)
Pianola - visualization of multivariate time-series security event data. In Proceedings of IV2013, 123-131. https://doi.org/10.1109/IV.2013.15
Monitoring log files for network intrusions is unwieldy. To build a mental model of the log, an analyst is required to recognise continuous timelines and attack patterns from ...
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation.
Conference Proceeding
Graham, M., Craig, P., & Kennedy, J. (2008)
Visualisation to Aid Biodiversity Studies through Accurate Taxonomic Reconciliation. In W. A. Gray, K. G. Jeffery, & J. Shao (Eds.), Proceedings of British National Conference on Database Systems: Sharing Data, Information and Knowledge, 280-291. https://doi.org/10.1007/978-3-540-70504-8_29
All aspects of organismal biology rely on the accurate identification
of specimens described and observed. This is particularly important for
ecological surveys of biodiversit...
MaTSE: The microarray time-series explorer
Conference Proceeding
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2012)
MaTSE: The microarray time-series explorer. In 2012 IEEE Symposium on Biological Data Visualization (BioVis), (41-48). https://doi.org/10.1109/biovis.2012.6378591
This paper describes the design, development and evaluation of the Microarray Time-Series Explorer (MaTSE), a novel information visualization application for the exploratory a...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...