Temporal Multivariate Networks.
Book Chapter
Archambault, D., Abello, J., Kennedy, J., Kobourov, S., Ma, K., Miksch, S., …Telea, A. C. (2014)
Temporal Multivariate Networks. In A. Kerren, H. Purchase, & M. Ward (Eds.), Multivariate Network Visualization, 151-175. Springer-Verlag. https://doi.org/10.1007/978-3-319-06793-3_8
In this chapter, we define, characterize, and summarize the data and visualization techniques relating to temporal multivariate networks. Section 2.1.1 provides definitions an...
MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...
A rule based taxonomy of dirty data.
Journal Article
Li, L., Peng, T., & Kennedy, J. (2011)
A rule based taxonomy of dirty data. GSTF journal on computing, 1(2), 140-148
There is a growing awareness that high quality of data is a key to today’s business success and that dirty data existing within data sources is one of the causes of poor data ...
Improving data quality in data warehousing applications
Conference Proceeding
Li, L., Peng, T., & Kennedy, J. (2010)
Improving data quality in data warehousing applications. In J. Filipe, & J. Cordeiro (Eds.), Proceedings of the 12th International Conference on Enterprise Information Systems, 379-382. https://doi.org/10.5220/0002903903790382
There is a growing awareness that high quality of data is a key to today’s business success and dirty data that exits within data sources is one of the reasons that cause poor...
Form
Book Chapter
Kennedy, J., & Cannon, A. (2009)
Form. In L. Liu, & M. T. Özsu (Eds.), Encyclopedia of Database SystemsSpringer-Verlag
The minimum information about a genome sequence (MIGS) specification
Journal Article
Field, D., Garrity, G., Gray, T., Morrison, N., Selengut, J., Sterk, P., …Wipat, A. (2008)
The minimum information about a genome sequence (MIGS) specification. Nature Biotechnology, 26, 541-547. https://doi.org/10.1038/nbt1360
With the quantity of genomic data increasing at an exponential rate, it is imperative that these data be captured electronically, in a standard format. Standardization activit...
A standard data model representation for taxonomic information.
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006)
A standard data model representation for taxonomic information. OMICS, 10, 220-230. doi:10.1089/omi.2006.10.220
The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated...
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data. BMC Bioinformatics, 6(Suppl 3), P8. https://doi.org/10.1186/1471-2105-6-S3-P8
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...
The Prometheus Description Model: an examination of the taxonomic description-building process and its representation
Journal Article
Pullan, M. R., Armstrong, K. E., Paterson, T., Cannon, A., Kennedy, J. B., Watson, M. F., …Raguenaud, C. (2005)
The Prometheus Description Model: an examination of the taxonomic description-building process and its representation. Taxon, 54(3), 751-765. https://doi.org/10.2307/25065431
A model for representing taxonomic descriptive data is presented. The model has been developed in response to the growing requirement for the global exchange of descriptive da...