Temporal Multivariate Networks.
Book Chapter
Archambault, D., Abello, J., Kennedy, J., Kobourov, S., Ma, K., Miksch, S., …Telea, A. C. (2014)
Temporal Multivariate Networks. In A. Kerren, H. Purchase, & M. Ward (Eds.), Multivariate Network Visualization, 151-175. Springer-Verlag. https://doi.org/10.1007/978-3-319-06793-3_8
In this chapter, we define, characterize, and summarize the data and visualization techniques relating to temporal multivariate networks. Section 2.1.1 provides definitions an...
MaTSE: the gene expression time-series explorer.
Journal Article
Craig, P., Cannon, A., Kukla, R., & Kennedy, J. (2013)
MaTSE: the gene expression time-series explorer. BMC bioinformatics, 14, https://doi.org/10.1186/1471-2105-14-S19-S1
Background
High throughput gene expression time-course experiments provide a perspective on biological functioning recognized as having huge value for the diagnosis, treatmen...
The dimensions and complexities of audio-visual association.
Conference Proceeding
Tsiros, A. (2013)
The dimensions and complexities of audio-visual association. In Electronic Workshops in Computing (eWiC)
This paper draws on literature from psychology, neuroscience, linguistics, and philosophy to portray a cross-modal conception of auditory and visual phenomena focusing on the ...
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Journal Article
Paterson, T., Graham, M., Kennedy, J., & Law, A. (2012)
VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees. BMC Bioinformatics, 13/8, https://doi.org/10.1186/1471-2105-13-S8-S5
Pedigree genotype datasets are used for analysing genetic inheritance and to map genetic markers and traits. Such datasets consist of hundreds of related animals genotyped for...
Refactoring data transforms in MaTSE for flexibility.
Presentation / Conference
Craig, P., & Kennedy, J. (2009, October)
Refactoring data transforms in MaTSE for flexibility
In early prototypes of the Microarray Time-series Explorer
(MaTSE) data transforms were tightly coupled with visualisation components. While this allowed us to achieve our ini...
Re-architecting Visualizations to Java Swing.
Presentation / Conference
Graham, M., & Kennedy, J. (2009, October)
Re-architecting Visualizations to Java Swing. Paper presented at REVISE: Refactoring Visualization from Experience, VizWeek Workshop
Progressive skinning for video game character animations.
Conference Proceeding
Pilgrim, S. J., Aguado, A., Mitchell, K., & Steed, A. (2006)
Progressive skinning for video game character animations. . https://doi.org/10.1145/1179849.1179992
A standard data model representation for taxonomic information.
Journal Article
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006)
A standard data model representation for taxonomic information. OMICS, 10, 220-230. doi:10.1089/omi.2006.10.220
The names used by biologists to label the observations they make are imprecise. This is an issue as workers increasingly seek to exploit data gathered from multiple, unrelated...
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Time-series Explorer: An Animated Information Visualisation for Microarray Time-course Data. BMC Bioinformatics, 6(Suppl 3), P8. https://doi.org/10.1186/1471-2105-6-S3-P8
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...
Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data.
Journal Article
Craig, P., Kennedy, J., & Cumming, A. (2005)
Animated interval scatter-plot views for the exploratory analysis of large scale microarray time-course data. Information Visualization, 4, 149-163. doi:10.1057/palgrave.ivs.9500101
Microarray technologies are a relatively new development that allow biologists to monitor the activity of thousands of genes (normally around 8,000) in parallel across multipl...